A rāhui has been placed over the Stewart Island bay where 145 pilot whales died.
Two pods stranded at Mason Bay were discovered by a tramper camping in the area on Saturday.
More than half the whales were dead when Department Of Conservation (DOC) staff arrived and the rest were euthanised because of their poor condition.
DOC said it would let nature take its course with the corpses; meanwhile signs were up warning people not to swim in the bay or touch the whales.
Travel blogger Liz Carlson was heading back to her camp while on a five-day trip on Stewart Island when she came across the "horror" scene.
"We dropped everything and ran straight into the water," she posted online.
"Desperately we grabbed their tails and pushed and yelled, before we got hammered by them thrashing around. It was useless - they were so big and heavy and the realization we could do nothing to save them was the worst feeling I've ever experienced."
One the fellow travellers sprinted 15km back to a base where DOC rangers were to raise the alarm, she said.
She said she was left heartbroken after eventually realising they would die.
"I'll never forget their cries, the way they watched me as I sat with them in the water, how they desperately tried to swim but their weight only dug them deeper into the sands.
"I sank to my knees in the sand screaming in frustration and crying, with the sound of dozens of dying whales behind me, utterly alone.
"I'll never be the same after this."